kwneuro package

Copyright (c) 2024 Kitware. All rights reserved.

kwneuro: Processing pipelines to extract brain microstructure from diffusion MRI

Submodules

• kwneuro.build_template module
  • average_volumes()
  • build_multi_metric_template()
  • build_template()
• kwneuro.csd module
  • combine_csd_peaks_to_vector_volume()
  • combine_response_functions()
  • compute_csd_fods()
  • compute_csd_peaks()
  • estimate_response_function()
• kwneuro.denoise module
  • denoise_dwi()
• kwneuro.dti module
  • Dti
• kwneuro.dwi module
  • Dwi
• kwneuro.io module
  • FslBvalResource
  • FslBvecResource
  • JsonResponseFunctionResource
  • NiftiVolumeResource
• kwneuro.masks module
  • brain_extract_batch()
  • brain_extract_single()
• kwneuro.noddi module
  • Noddi
• kwneuro.reg module
  • TransformResource
  • register_volumes()
• kwneuro.resource module
  • BvalResource
  • BvecResource
  • InMemoryBvalResource
  • InMemoryBvecResource
  • InMemoryResponseFunctionResource
  • InMemoryVolumeResource
  • Resource
  • ResponseFunctionResource
  • VolumeResource
• kwneuro.run module
• kwneuro.tractseg module
  • extract_tractseg()
• kwneuro.util module
  • create_estimate_volume_resource()
  • deep_equal_allclose()
  • normalize_path()
  • update_volume_metadata()